A survey of childhood Ependymoma

UMAP of tumor populations

Droplet-based (10x Chromium) single cell RNA-seq UMAP of 11,200 neoplastic cells from 26 childhood ependymoma samples (PFA1, PFA2, PFB, ST-RELA, ST-YAP). Accompanies the study by Gillen et al. “Single-cell RNAseq of childhood ependymoma reveals neoplastic cell subpopulations that impact molecular classification and etiology”.

Data availability

scRNA-seq and transcriptome data have been deposited in the National Center for Biotechnology Information Gene Expression Omnibus (GEO) database and are publicly accessible through GEO SuperSeries accession number GSE12602

Supported by

National Institutes of Health (R01 CA237608-01)
Cancer League of Colorado (research grant AWD 173796-SV)
Tanner Seebaum Foundation
Morgan Adams Foundation
University of Colorado’s NIH/NCI Cancer Center (P30CA046934)